satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R for data science: a book
R toolkit for the analysis of single-cell chromatin data
🎓 A collection of interactive courses for the swirl R package.
R package for detecting doublets in single-cell RNA sequencing data
Rmd source files for the HarvardX series PH525x
Fast, sensitive and accurate integration of single-cell data with Harmony
Inferring CNV from Single-Cell RNA-Seq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Repository for Programming Assignment 2 for R Programming on Coursera
Tree-sitter grammar for R
Interfaces for HDF5-based Single Cell File Formats
Accurate sample inference from amplicon data with single nucleotide resolution
dplyr: A grammar of data manipulation